Here we summarize the Notre Dame data.
Archaea | Bacterium | Eukaryote |
The networks created from the original data are directed, but undirected projections have then been generated. Clicking on Edges and Edgesd takes you to the corresponding B matrix.
Model | Organism Name / Links | Nodes | Edges | Edgesd | |
---|---|---|---|---|---|
1 | AP | Aeropyrum pernix | 517 | 1148 | 1163 |
2 | AG | Archaeoglobus fulgidus | 1281 | 2980 | 3011 |
3 | TH | Methanobacterium thermoautotrophicum | 1138 | 2682 | 2705 |
4 | MJ | Methanococcus jannaschii | 1103 | 2561 | 2589 |
5 | PF | Pyrococcus furiosus | 790 | 1752 | 1768 |
6 | PH | Pyrococcus horikoshii | 807 | 1781 | 1796 |
7 | AA | Aquifex aeolicus | 1105 | 2503 | 2527 |
8 | CQ | Chlamydia pneumoniae | 412 | 786 | 792 |
9 | CT | Chlamydia trachomatis | 467 | 935 | 941 |
10 | CY | Synechocystis sp. | 1486 | 3499 | 3528 |
11 | PG | Porphyromonas gingivalis | 1052 | 2330 | 2348 |
12 | MB | Mycobacterium bovis | 1102 | 2447 | 2468 |
13 | ML | Mycobacterium leprae | 1106 | 2495 | 2515 |
14 | MT | Mycobacterium tuberculosis | 1534 | 3655 | 3685 |
15 | BS | Bacillus subtilis | 2217 | 5427 | 5535 |
16 | EF | Enterococcus faecalis | 1049 | 2433 | 2462 |
17 | CA | Clostridium acetobutylicum | 1349 | 3170 | 3202 |
18 | MG | Mycoplasma genitalium | 490 | 1030 | 1060 |
19 | MP | Mycoplasma pneumoniae | 420 | 926 | 936 |
20 | PN | Streptococcus pneumoniae | 1116 | 2595 | 2629 |
21 | ST | Streptococcus pyogenes | 1087 | 2529 | 2577 |
22 | CL | Chlorobium tepidum | 953 | 2144 | 2159 |
23 | RC | Rhodobacter capsulatus | 1808 | 4248 | 4296 |
24 | RP | Rickettsia prowazekii | 469 | 1006 | 1014 |
25 | NG | Neisseria gonorrhoeae | 1104 | 2531 | 2568 |
26 | NM | Neisseria meningitidis | 1032 | 2359 | 2393 |
27 | CJ | Campylobacter jejuni | 993 | 2228 | 2257 |
28 | HP | Helicobacter pylori | 996 | 2291 | 2325 |
29 | EC | Escherichia coli | 2316 | 5627 | 5763 |
30 | TY | Salmonella typhi | 2403 | 5822 | 5959 |
31 | YP | Yersinia pestis | 1534 | 3403 | 3469 |
32 | AB | Actinobacillus actinomycetemcomitans | 1046 | 2336 | 2368 |
33 | HI | Haemophilus influenzae | 1484 | 3423 | 3519 |
34 | PA | Pseudomonas aeruginosa | 2023 | 4790 | 4851 |
35 | TP | Treponema pallidum | 506 | 1101 | 1117 |
36 | BB | Borrelia burgdorferi | 433 | 861 | 880 |
37 | TM | Thermotoga maritima | 863 | 1967 | 1980 |
38 | DR | Deinococcus radiodurans | 2337 | 5588 | 5681 |
39 | EN | Emericella nidulans | 976 | 2164 | 2176 |
40 | SC | Saccharomyces cerevisiae | 1559 | 3807 | 3833 |
41 | CE | Caenorhabditis elegans | 1207 | 2842 | 2864 |
42 | OS | Oryza sativa | 708 | 1505 | 1514 |
43 | AT | Arabidopsis thaliana | 737 | 1585 | 1593 |